The Michael lab is actively developing bioinformatic tools and software for genome analysis. If you have ideas for plant genome analysis software and would like to collaborate, please contact us via email.

Super Cycler
Pipeline that merges and augments the DIURNAL time of day (TOD) analysis suite of tools: HAYSTACK and ELEMENT
https://gitlab.com/NolanHartwick/super_cycling

TeloNum
Identifies telomere length from long read sequencing
https://gitlab.com/semarpetrus/telonum

Orthopos
Tools to enhance orthofinder results
https://gitlab.com/NolanHartwick/orthopos

LoopViz
Long read plasmid assembly for Loop cloning
https://gitlab.com/marielelensink325/loopseq
https://www.biorxiv.org/content/10.1101/2021.02.01.427927v1

Plasmid assembly with long reads
Tool to assemble plasmids using Oxford Nanopore Technologies (ONT) long reads
https://gitlab.com/NolanHartwick/plasmid_assembly

PanKmer
Reference-free pan genome tools
Under development