Published and unpublished genomes from the Michael lab can be downloaded here. If a genome is unpublished and you would like to use it for your analysis, please contact Todd Michael via email.

Selaginella lepidophylla
R. VanBuren, C. M. Wai, S. Ou, J. Pardo, D. Bryant, N. Jiang, T. C. Mockler, P. Edger, T. P. Michael, Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nat. Commun.9, 13 (2018).

Isoetes taiwanensis
D. Wickell, L.-Y. Kuo, H.-P. Yang, A. D. Ashok, I. Irisarri, A. Dadras, S. de Vries, J. de Vries, Y.-M. Huang, Z. Li, M. S. Barker, N. T. Hartwick, T. P. Michael, F.-W. Li, Underwater CAM photosynthesis elucidated by Isoetes genome. bioRxiv (2021), p. 2021.06.09.447806.

Sedum album
C. M. Wai, S. E. Weise, P. Ozersky, T. C. Mockler, T. P. Michael, R. VanBuren, Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album. PLoS Genet.15, e1008209 (2019).

Tef (Eragrostis tef)
R. VanBuren, C. Man Wai, X. Wang, J. Pardo, A. E. Yocca, H. Wang, S. R. Chaluvadi, G. Han, D. Bryant, P. P. Edger, J. Messing, M. E. Sorrells, T. C. Mockler, J. L. Bennetzen, T. P. Michael, Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nat. Commun.11, 884 (2020).

Oropetium thomaeum
R. VanBuren, D. Bryant, P. P. Edger, H. Tang, D. Burgess, D. Challabathula, K. Spittle, R. Hall, J. Gu, E. Lyons, M. Freeling, D. Bartels, B. Ten Hallers, A. Hastie, T. P. Michael, T. C. Mockler, Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 527, 508–511 (2015).

Spirodela polyrhiza sp7498
W. Wang, G. Haberer, H. Gundlach, C. Gläßer, T. Nussbaumer, M. C. Luo, A. Lomsadze, M. Borodovsky, R. A. Kerstetter, J. Shanklin, D. W. Byrant, T. C. Mockler, K. J. Appenroth, J. Grimwood, J. Jenkins, J. Chow, C. Choi, C. Adam, X.-H. Cao, J. Fuchs, I. Schubert, D. Rokhsar, J. Schmutz, T. P. Michael, K. F. X. Mayer, J. Messing, The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat. Commun.5, 3311 (2014).

Spirodela polyrhiza sp9509
P. N. T. Hoang, T. P. Michael, S. Gilbert, P. Chu, S. T. Motley, K. J. Appenroth, I. Schubert, E. Lam, Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping, and Oxford Nanopore technologies. Plant J.96, 670–684 (2018).

Wolffia australiana
T. P. Michael, E. Ernst, N. Hartwick, P. Chu, D. Bryant, S. Gilbert, S. Ortleb, E. L. Baggs, K. S. Sree, K. J. Appenroth, J. Fuchs, F. Jupe, J. P. Sandoval, K. V. Krasileva, L. Borisjuk, T. C. Mockler, J. R. Ecker, R. A. Martienssen, E. Lam, Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. Genome Res. (2020), doi:10.1101/gr.266429.120.

Lemna minuta

Wolffiella neotropica

Landoltia punctata

Arabidopsis thaliana
T. P. Michael, F. Jupe, F. Bemm, S. T. Motley, J. P. Sandoval, C. Lanz, O. Loudet, D. Weigel, J. R. Ecker, High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nat. Commun.9, 541 (2018).

F. Jupe, A. C. Rivkin, T. P. Michael, M. Zander, S. T. Motley, J. P. Sandoval, R. K. Slotkin, H. Chen, R. Castanon, J. R. Nery, J. R. Ecker, The complex architecture and epigenomic impact of plant T-DNA insertions. PLoS Genet.15, e1007819 (2019).

M. Naish, M. Alonge, P. Wlodzimierz, A. J. Tock, B. W. Abramson, A. Schmücker, T. Mandáková, B. Jamge, C. Lambing, P. Kuo, N. Yelina, N. Hartwick, K. Colt, L. M. Smith, J. Ton, T. Kakutani, R. A. Martienssen, K. Schneeberger, M. A. Lysak, F. Berger, A. Bousios, T. P. Michael, M. C. Schatz, I. R. Henderson, The genetic and epigenetic landscape of the Arabidopsis centromeres. Science. 374, eabi7489 (2021).

Hemp (Cannabis sativa)
C. J. Grassa, G. D. Weiblen, J. P. Wenger, C. Dabney, S. G. Poplawski, S. Timothy Motley, T. P. Michael, C. J. Schwartz, A new Cannabis genome assembly associates elevated cannabidiol (CBD) with hemp introgressed into marijuana. New Phytol.230, 1665–1679 (2021).

Cassava (Manihot esculenta)
B. N. Mansfeld, A. Boyher, J. C. Berry, M. Wilson, S. Ou, S. Polydore, T. P. Michael, N. Fahlgren, R. S. Bart, Large structural variations in the haplotype-resolved African cassava genome. Plant J. (2021), doi:10.1111/tpj.15543.